File _service:obs_scm:racon.spec of Package racon

Name:           racon
Version:        1.4.20
Release:        2
Summary:        Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads.

License:        Apache-2.0 and BSL-1.0 and MIT
URL:            https://github.com/lbcb-sci/%{name}
Source0:        %{url}/releases/download/%{version}/%{name}-v%{version}.tar.gz

Patch0:         fix_racon_wrapper_path.patch
Patch1:         fix_uninitialized_error.patch

BuildRequires:  gcc-c++ cmake make gmock-devel zlib-devel boost-devel doxygen gtest gtest-devel

%description
Racon is intended as a standalone consensus module to correct raw contigs
generated by rapid assembly methods which do not include a consensus step.
The goal of Racon is to generate genomic consensus which is of similar or
better quality compared to the output generated by assembly methods which
employ both error correction and consensus steps, while providing a speedup
of several times compared to those methods. It supports data produced by
both Pacific Biosciences and Oxford Nanopore Technologies.

%prep
%autosetup -n %{name}-v%{version} -p1

%build
%{__mkdir_p} build
pushd build || exit 1
%cmake -DCMAKE_INSTALL_PREFIX=/usr \
    -DCMAKE_BUILD_TYPE=Release \
    -Dracon_build_wrapper=ON \
%ifarch x86_64
    -DCMAKE_CXX_FLAGS="-std=c++11 -mno-avx512f -g" \
%else
    -DCMAKE_CXX_FLAGS="-std=c++11 -g" \
%endif
    -Dracon_build_tests=ON ..
%make_build

%check
if test -f ./build/bin/%{name}_test; then
    ./build/bin/%{name}_test
fi

%install
pushd build || exit 1
%make_install
install -d -m 0755 %{buildroot}/%{_libdir}

# package racon
install -D -m 0755 ./bin/%{name}_wrapper %{buildroot}/%{_bindir}/
install -D -m 0755 ./vendor/spoa/lib/* %{buildroot}/%{_libdir}/

%files
%license LICENSE
%doc README.md
%{_bindir}/%{name}
%{_bindir}/%{name}_wrapper
%{_bindir}/rampler
%{_libdir}/libspoa*

%changelog
* Mon Apr 11 2022 herengui <herengui@uniontech.com> - 1.4.20-2
- update buildrequires to fix build issues.

* Tue Mar 23 2021 He Rengui <herengui@uniontech.com> - 1.4.20-1
- Package init